Data Set APSR 2.0 - Concept Specimen

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Name	ID[‑]	Datatype[‑]	Example[‑]	Description[‑]	Source[‑]	Status[‑]	Terminology[‑]	Type[‑]	Parent concept[‑]
Specimen	psr-dataelement-1			A substance, physical object or collection of objects that the laboratory considers a single discrete, uniquely identified unit that is the subject of one or more steps in the laboratory workflow. This is usually a part, a block or a slide.	HL/ DAM: Specimen, rel.1, May 2014	draft	Specimen (specimen) (SNOMED Clinical Terms: 123038009)	Group
Part	psr-dataelement-34			An organ or part of an organ or a collection of parts sent to the laboratory under a unique (sub-)order identifier for trimming, blocking, cutting and staining		draft		Group	Specimen
Part ID	psr-dataelement-66	Identifier	<id root="1.3.6.1.4.1.19376.1.8.9.9" extension="A7102400008_A1"/>	Identifier of the part, issued by the LIS. It corresponds with the Order ID.		draft		Item	Part
Block	psr-dataelement-35			A piece of tissue under a unique identifier resulting from trimming, embedded in paraffin or othe embedding media (usually FFPE ... Formalin-fixed, Paraffin-embedded).		draft		Group	Part
Block ID	psr-dataelement-67	Identifier	<id root="1.3.6.1.4.1.19376.1.8.9.9" extension="A7102400008_A1_1"/>	Identifier of the paraffin block, issued by the LIS as work order ID. In most cases identical with a container ID of the tissue cassette.		draft		Item	Block
Tissue section	psr-dataelement-36			A section of tissue on a glass-slide, mounted in medium and covered by a cover plate, carrying a unique identifier, resulting from cutting from a block with subsequent staining procedure		draft		Group	Block
Tissue section ID	psr-dataelement-68	Identifier	<id root="1.3.6.1.4.1.19376.1.8.9.9" extension="A7102400008_A1_1_1HE"/>	Identifier of the slide, issued by the LIS. It corresponds with a Work order ID or a Specimen work order step ID		draft		Item	Tissue section
Materialherkunft	psr-dataelement-119	Code		Lokalisation der Körperstelle, von der das Material stammt.		draft		Item	Specimen
Specimen identification	psr-dataelement-17			Identification of the specimen, done by identifiers, issued by the LIS.		draft		Group	Specimen
Specimen ID	psr-dataelement-98	Identifier		Identifier for the specimen, issued by the LIS. These can be Part-ID, ID of the embedded tissue (so-called Block-ID), or ID of the sectioned and stained tissue (so-called Slide-ID). An ID of the sectioned, unstained tissue (Tissue section-ID) is usually not given by the LIS		draft		Item	Specimen identification
Parent ID	psr-dataelement-95	Identifier		ID of the parent specimen, issued by the LIS Each specimen has a pair of IDs, consisting of its own and of its parent. The relationship between both need not to be expressed by the ID syntax.		draft		Item	Specimen identification
Container	psr-dataelement-70			Physical object that touches and holds specimen. Those may be vessels, syringes, plastic bags etc., especially important are Paraffin blocks and Slides.	HL7 Domain Analysis Model: Specimen, Release 1, May 2014	draft	Specimen container [Type] (Logical Observation Identifier Names and Codes: 74384-9) Specimen container (physical object) (SNOMED Clinical Terms: 434711009)	Group	Specimen
Container Identification	psr-dataelement-80	Identifier		Identification of the container that holds the specimen. In practice the containers are the only physical entities that carry a human (and machine-) readable identifier. Blocks and Slides may hold more than one specimen, also from different sources!		draft		Item	Container