Data Set APSR 2.0 - Concept Procedure

ID: 2.16.840.1.113883.2.6.60.6.1.1Version Label: Live VersionConcepts: 7 (Groups: 1 - Items: 6)

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Name ID[‑] Datatype[‑] Property[‑] Example[‑] Codes[‑] Description[‑] Source[‑] Rationale[‑] Operationalizations[‑] Comment[‑] Status[‑] Terminology[‑] Value Set[‑] Type[‑] Parent concept[‑] Inherit from[‑]
Procedure psr-dataelement-23 Procedure performed to obtain or process specimens, or to make an observation.
 IHE_PAT_Suppl_APSR_Rev2 0_TI_2013_10_02
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    Procedure (procedure) (SNOMED Clinical Terms: 71388002)
      		 Group
      ProcedureReport psr-dataelement-115 Text Report about the collection and processing of specimens
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          		Item Procedure
          Target Site psr-dataelement-94 Code
          • Body substance sample
          • Body fluid sample
          • Tissue section (specimen)
          • Formalin-fixed paraffin-embedded tissue specimen
          • Frozen tissue section sample (specimen)
          • Anatomic Pathology Specimen Types
          • Gross specimen
          • Core sample of tissue block
          • Tissue spot
          • Smear sample
          • Touch preparation cytologic material
          • Liquid based cytologic material
          • Aspirate
          • Cytologic material (specimen)
          		 Site of the target for a procedure, i.e. a site relative to a parent relationship.
          In case of specimen collection procedure this is a body structure (anatomic site), in case of a specimen treating procedure this is a whole parent specimen or part of a parent specimen.
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            Procedure site (attribute) (SNOMED Clinical Terms: 363704007)
              Procedure Site 2016-06-01T18:46:15 (dynamic)
              		 Item Procedure
              Procedure ID psr-dataelement-87 Identifier <id root="1.3.6.1.4.1.19376.1.8.9.9" extension="A7102400008_P1"/> ID of the procedure, issued by the LIS. May be an Order filler ID, a Work order ID or a Specimen Work Order Step ID
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                  		Item Procedure
                  Device psr-dataelement-79 String Device is any machinery in the pathology lab, which is used for procedures on, and both analyses and measurements of specimens for observations (IvD)
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                      		Item Procedure
                      Specimen collection psr-dataelement-24 Code
                      • Specimen collection
                      • Specimen collection (procedure)
                      • Fine needle biopsy (procedure)
                      • Biopsy (procedure)
                      • Brush biopsy (procedure)
                      • Endoscopic biopsy (procedure)
                      • Excisional biopsy (procedure)
                      • Imaging guided biopsy (procedure)
                      • Fine needle aspiration biopsy using imaging guidance (procedure)
                      • Magnetic resonance imaging guided biopsy (procedure)
                      • Ultrasound guided biopsy (procedure)
                      • X-ray guided biopsy (procedure)
                      • Staging operation involving incision, exploration and biopsy (procedure)
                      • Incisional biopsy (procedure)
                      • Needle biopsy (procedure)
                      • Open biopsy (procedure)
                      • Punch biopsy (procedure)
                      • Shave biopsy (procedure)
                      • Surgical biopsy (procedure)
                      • Trephine biopsy (procedure)
                      • Excision (procedure)
                      • Amputation (procedure)
                      • Local excision (procedure)
                      • Lobectomy (procedure)
                      • Hemi-excision (procedure)
                      • Partial excision (procedure)
                      • Segmental excision and ligation (procedure)
                      • Reexcision (procedure)
                      • Radical excision (procedure)
                      • Radical excision with lymph node dissection (procedure)
                      • Complete excision of organ (procedure)
                      • Excision of neoplasm (procedure)
                      • Wedge resection (procedure)
                      • Scraping (procedure)
                      • Biopsies without incision
                      • Biopsies with incision
                      • Surgical measures
                      • Diagnostic measures
                      • all children of Specimen Collection Procedure
                      • all children of 0
                      • Specimen treatment
                      • all children of Specimen Sampling Procedures
                      • all children of Specimen Preparation Procedure
                      • all children of Specimen Stains
                      • all children of Specimen Preparation Steps
                      • all children of Specimen Fixatives
                      • Specimen processing (procedure)
                      • Touch preparation of specimen (procedure)
                      • Preparation of smear (procedure)
                      • Cytopathology procedure, cell block and smear preparation (procedure)
                      • Specimen aliquoting (procedure)
                      • Trimming (procedure)
                      • Specimen centrifugation (procedure)
                      • Specimen freezing (procedure)
                      • Nucleic acid molecular isolation or extraction method (procedure)
                      • Tissue processing technique (procedure)
                      • Tissue frozen section technique, complete (procedure)
                      • Tissue processing technique, routine, embed, cut and stain, per surgical specimen (procedure)
                      • Sectioning of tissue block (procedure)
                      • Step sectioning of tissue block (procedure)
                      • Surface recutting of tissue block (procedure)
                      • Core sampling of tissue block (procedure)
                      • Microdissection of tissue specimen using laser (procedure)
                      • Paraffin embedding (qualifier value)
                      • Staining method (procedure)
                      • Acid phosphatase stain method (procedure)
                      • Neutrophil alkaline phosphatase stain method (procedure)
                      • New fuchsin stain method (procedure)
                      • Nile blue stain method (procedure)
                      • Nitrazine yellow stain method (procedure)
                      • Nonspecific esterase stain method (procedure)
                      • Nuclear fast red stain method (procedure)
                      • Orange G stain method (procedure)
                      • Orange II stain method (procedure)
                      • Page blue 83 stain method (procedure)
                      • Page blue G-90 stain method (procedure)
                      • Patent blue V sodium salt stain method (procedure)
                      • Permethrin stain method (procedure)
                      • Phloxin B stain method (procedure)
                      • Ponceau 3R stain method (procedure)
                      • Ponceau S stain method (procedure)
                      • Ponceau xylidine stain method (procedure)
                      • Pontamine sky blue 5BX stain method (procedure)
                      • Naphthol yellow S stain method (procedure)
                      • Naphthol green B stain method (procedure)
                      • Naphthalene black 12B stain method (procedure)
                      • Lawson-Van Gieson stain method (procedure)
                      • Leishman stain method (procedure)
                      • Light green SF stain method (procedure)
                      • Lissamine fast red B stain method (procedure)
                      • Lissamine fast yellow stain method (procedure)
                      • Lissamine rhodamine stain method (procedure)
                      • Malachite green stain method (procedure)
                      • Mallory bleach stain method (procedure)
                      • Martius yellow stain method (procedure)
                      • Meldola blue stain method (procedure)
                      • Metanil yellow stain method (procedure)
                      • Methyl blue stain method (procedure)
                      • Methyl orange stain method (procedure)
                      • Methyl red stain method (procedure)
                      • Methylene blue stain method (procedure)
                      • Methylene violet stain (Bernthsen) method (procedure)
                      • Microbial stain method (procedure)
                      • Pontamine sky blue 6BX stain method (procedure)
                      • Procion brilliant blue MRS stain method (procedure)
                      • Quinacrine fluorescent stain method (procedure)
                      • Sudan blue stain method (procedure)
                      • Sunset yellow FCF stain method (procedure)
                      • Supravital stain method (procedure)
                      • Tartrazine stain method (procedure)
                      • Thioflavine T stain method (procedure)
                      • Thionine stain method (procedure)
                      • Titan yellow stain method (procedure)
                      • Tropaeolin O stain method (procedure)
                      • Tropaeolin OO stain method (procedure)
                      • Trypan blue stain method (procedure)
                      • Vital new red stain method (procedure)
                      • Vital stain method (procedure)
                      • Water soluble aniline blue stain method (procedure)
                      • Water soluble anthracene brown stain method (procedure)
                      • Water soluble nigrosine stain method (procedure)
                      • Waxoline blue stain method (procedure)
                      • Xylene cyanol FF stain method (procedure)
                      • Sudan black stain method (procedure)
                      • Sudan black B stain method (procedure)
                      • Sudan IV stain method (procedure)
                      • Romanowsky stain method (procedure)
                      • Rose bengal stain method (procedure)
                      • Rosolic acid sodium salt stain method (procedure)
                      • Saffron stain method (procedure)
                      • Schmorl stain method (procedure)
                      • Silver stain method (procedure)
                      • Sirius red F3B stain method (procedure)
                      • Solochrome azurine (BS) stain method (procedure)
                      • Solochrome black 6B stain method (procedure)
                      • Solochrome cyanine R stain method (procedure)
                      • Solochrome dark blue stain method (procedure)
                      • Soluble berlin blue stain method (procedure)
                      • Spirit soluble aniline blue stain method (procedure)
                      • Spirit soluble eosin stain method (procedure)
                      • Spore stain method (procedure)
                      • Sudan II stain method (procedure)
                      • Sudan III stain method (procedure)
                      • Lacmoid stain method (procedure)
                      • Kenacid blue R stain method (procedure)
                      • Bismark brown Y stain method (procedure)
                      • Blue shade eosin stain method (procedure)
                      • Brazilin stain method (procedure)
                      • Brilliant cresyl blue stain method (procedure)
                      • Brilliant crocein stain method (procedure)
                      • Brilliant orange stain method (procedure)
                      • Brilliant yellow stain method (procedure)
                      • Calcofluor white stain (procedure)
                      • Carminic acid stain method (procedure)
                      • Carmoisine A stain method (procedure)
                      • Celestine blue B stain method (procedure)
                      • Chloroacetate esterase stain method (procedure)
                      • Chromotrope 2R stain method (procedure)
                      • Chrysoidine R stain method (procedure)
                      • Chrysoidine Y stain method (procedure)
                      • Cochineal stain method (procedure)
                      • Congo red stain method (procedure)
                      • Bismark brown R stain method (procedure)
                      • Biebrich scarlet stain method (procedure)
                      • Beta-glucuronidase stain method (procedure)
                      • Albert's stain method (procedure)
                      • Alcian blue stain method (procedure)
                      • Alcohol soluble nigrosine stain method (procedure)
                      • Alizarin blue S stain method (procedure)
                      • Alizarin cyanine green stain method (procedure)
                      • Alizarin red S stain method (procedure)
                      • Alizarin yellow GG stain method (procedure)
                      • Alizarin yellow R stain method (procedure)
                      • Auramine stain method (procedure)
                      • Azo black stain method (procedure)
                      • Azocarmine G (GX) stain method (procedure)
                      • Azophloxin stain method (procedure)
                      • Azorubin S stain method (procedure)
                      • Azure A stain method (procedure)
                      • Azure B stain method (procedure)
                      • Azure C stain method (procedure)
                      • Benzo fast scarlet stain method (procedure)
                      • Crystal ponceau stain method (procedure)
                      • Curcumin stain method (procedure)
                      • Cytopathology staining method (procedure)
                      • Flagellar stain method (procedure)
                      • Fluorescent stain method (procedure)
                      • Fuchsin acid stain method (procedure)
                      • Fuchsin basic stain method (procedure)
                      • Fungus stain method (procedure)
                      • Gallocyanine stain method (procedure)
                      • Hall's bilirubin stain (procedure)
                      • Hematein stain method (procedure)
                      • Hematology staining procedure (procedure)
                      • Immunofluorescent stain method (procedure)
                      • Indigo carmine stain method (procedure)
                      • Indophenol from naphthol stain method (procedure)
                      • Insoluble berlin blue stain method (procedure)
                      • Janus green B stain method (procedure)
                      • Jenner-Giemsa stain method (procedure)
                      • Field's stain method (procedure)
                      • Feulgen reaction stain method (procedure)
                      • Fat red 7B stain method (procedure)
                      • Diamond black stain method (procedure)
                      • Durazol red stain method (procedure)
                      • Erie garnet stain method (procedure)
                      • Eriochrome blue black SE stain method (procedure)
                      • Erythrosin B stain method (procedure)
                      • Erythrosin Y stain method (procedure)
                      • Evans blue stain method (procedure)
                      • Fast blue B salt stain method (procedure)
                      • Fast blue BB salt stain method (procedure)
                      • Fast blue RR salt stain method (procedure)
                      • Fast garnet GBC salt stain method (procedure)
                      • Fast green FCF stain method (procedure)
                      • Fast red B salt stain method (procedure)
                      • Fast red ITR stain method (procedure)
                      • Fast red TR salt stain method (procedure)
                      • Fast sulfon black F stain method (procedure)
                      • Fast violet B salt stain method (procedure)
                      • Ziehl-Neelsen stain method (procedure)
                      • Hematoxylin and eosin stain method (procedure)
                      • Harris regressive hematoxylin and eosin stain method (procedure)
                      • Mayers progressive hematoxylin and eosin stain method (procedure)
                      • Special stain, blood or bone marrow, explain by report (procedure)
                      • Immunohistochemistry procedure (procedure)
                      • Nucleic acid hybridization procedure (procedure)
                      		 Procedure performed by a clinician as to obtain a specimen for pathologic investigation.
                      • The product of this procedure is a specimen.
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                      Removal (procedure) (SNOMED Clinical Terms: 118292001)
                        Specimen Collection and Processing 2016-05-31T15:09:59 (dynamic / Extensible/CWE)
                        		 Item Procedure
                        Specimen processing psr-dataelement-25 Code
                        • Specimen collection
                        • Specimen collection (procedure)
                        • Fine needle biopsy (procedure)
                        • Biopsy (procedure)
                        • Brush biopsy (procedure)
                        • Endoscopic biopsy (procedure)
                        • Excisional biopsy (procedure)
                        • Imaging guided biopsy (procedure)
                        • Fine needle aspiration biopsy using imaging guidance (procedure)
                        • Magnetic resonance imaging guided biopsy (procedure)
                        • Ultrasound guided biopsy (procedure)
                        • X-ray guided biopsy (procedure)
                        • Staging operation involving incision, exploration and biopsy (procedure)
                        • Incisional biopsy (procedure)
                        • Needle biopsy (procedure)
                        • Open biopsy (procedure)
                        • Punch biopsy (procedure)
                        • Shave biopsy (procedure)
                        • Surgical biopsy (procedure)
                        • Trephine biopsy (procedure)
                        • Excision (procedure)
                        • Amputation (procedure)
                        • Local excision (procedure)
                        • Lobectomy (procedure)
                        • Hemi-excision (procedure)
                        • Partial excision (procedure)
                        • Segmental excision and ligation (procedure)
                        • Reexcision (procedure)
                        • Radical excision (procedure)
                        • Radical excision with lymph node dissection (procedure)
                        • Complete excision of organ (procedure)
                        • Excision of neoplasm (procedure)
                        • Wedge resection (procedure)
                        • Scraping (procedure)
                        • Biopsies without incision
                        • Biopsies with incision
                        • Surgical measures
                        • Diagnostic measures
                        • all children of Specimen Collection Procedure
                        • all children of 0
                        • Specimen treatment
                        • all children of Specimen Sampling Procedures
                        • all children of Specimen Preparation Procedure
                        • all children of Specimen Stains
                        • all children of Specimen Preparation Steps
                        • all children of Specimen Fixatives
                        • Specimen processing (procedure)
                        • Touch preparation of specimen (procedure)
                        • Preparation of smear (procedure)
                        • Cytopathology procedure, cell block and smear preparation (procedure)
                        • Specimen aliquoting (procedure)
                        • Trimming (procedure)
                        • Specimen centrifugation (procedure)
                        • Specimen freezing (procedure)
                        • Nucleic acid molecular isolation or extraction method (procedure)
                        • Tissue processing technique (procedure)
                        • Tissue frozen section technique, complete (procedure)
                        • Tissue processing technique, routine, embed, cut and stain, per surgical specimen (procedure)
                        • Sectioning of tissue block (procedure)
                        • Step sectioning of tissue block (procedure)
                        • Surface recutting of tissue block (procedure)
                        • Core sampling of tissue block (procedure)
                        • Microdissection of tissue specimen using laser (procedure)
                        • Paraffin embedding (qualifier value)
                        • Staining method (procedure)
                        • Acid phosphatase stain method (procedure)
                        • Neutrophil alkaline phosphatase stain method (procedure)
                        • New fuchsin stain method (procedure)
                        • Nile blue stain method (procedure)
                        • Nitrazine yellow stain method (procedure)
                        • Nonspecific esterase stain method (procedure)
                        • Nuclear fast red stain method (procedure)
                        • Orange G stain method (procedure)
                        • Orange II stain method (procedure)
                        • Page blue 83 stain method (procedure)
                        • Page blue G-90 stain method (procedure)
                        • Patent blue V sodium salt stain method (procedure)
                        • Permethrin stain method (procedure)
                        • Phloxin B stain method (procedure)
                        • Ponceau 3R stain method (procedure)
                        • Ponceau S stain method (procedure)
                        • Ponceau xylidine stain method (procedure)
                        • Pontamine sky blue 5BX stain method (procedure)
                        • Naphthol yellow S stain method (procedure)
                        • Naphthol green B stain method (procedure)
                        • Naphthalene black 12B stain method (procedure)
                        • Lawson-Van Gieson stain method (procedure)
                        • Leishman stain method (procedure)
                        • Light green SF stain method (procedure)
                        • Lissamine fast red B stain method (procedure)
                        • Lissamine fast yellow stain method (procedure)
                        • Lissamine rhodamine stain method (procedure)
                        • Malachite green stain method (procedure)
                        • Mallory bleach stain method (procedure)
                        • Martius yellow stain method (procedure)
                        • Meldola blue stain method (procedure)
                        • Metanil yellow stain method (procedure)
                        • Methyl blue stain method (procedure)
                        • Methyl orange stain method (procedure)
                        • Methyl red stain method (procedure)
                        • Methylene blue stain method (procedure)
                        • Methylene violet stain (Bernthsen) method (procedure)
                        • Microbial stain method (procedure)
                        • Pontamine sky blue 6BX stain method (procedure)
                        • Procion brilliant blue MRS stain method (procedure)
                        • Quinacrine fluorescent stain method (procedure)
                        • Sudan blue stain method (procedure)
                        • Sunset yellow FCF stain method (procedure)
                        • Supravital stain method (procedure)
                        • Tartrazine stain method (procedure)
                        • Thioflavine T stain method (procedure)
                        • Thionine stain method (procedure)
                        • Titan yellow stain method (procedure)
                        • Tropaeolin O stain method (procedure)
                        • Tropaeolin OO stain method (procedure)
                        • Trypan blue stain method (procedure)
                        • Vital new red stain method (procedure)
                        • Vital stain method (procedure)
                        • Water soluble aniline blue stain method (procedure)
                        • Water soluble anthracene brown stain method (procedure)
                        • Water soluble nigrosine stain method (procedure)
                        • Waxoline blue stain method (procedure)
                        • Xylene cyanol FF stain method (procedure)
                        • Sudan black stain method (procedure)
                        • Sudan black B stain method (procedure)
                        • Sudan IV stain method (procedure)
                        • Romanowsky stain method (procedure)
                        • Rose bengal stain method (procedure)
                        • Rosolic acid sodium salt stain method (procedure)
                        • Saffron stain method (procedure)
                        • Schmorl stain method (procedure)
                        • Silver stain method (procedure)
                        • Sirius red F3B stain method (procedure)
                        • Solochrome azurine (BS) stain method (procedure)
                        • Solochrome black 6B stain method (procedure)
                        • Solochrome cyanine R stain method (procedure)
                        • Solochrome dark blue stain method (procedure)
                        • Soluble berlin blue stain method (procedure)
                        • Spirit soluble aniline blue stain method (procedure)
                        • Spirit soluble eosin stain method (procedure)
                        • Spore stain method (procedure)
                        • Sudan II stain method (procedure)
                        • Sudan III stain method (procedure)
                        • Lacmoid stain method (procedure)
                        • Kenacid blue R stain method (procedure)
                        • Bismark brown Y stain method (procedure)
                        • Blue shade eosin stain method (procedure)
                        • Brazilin stain method (procedure)
                        • Brilliant cresyl blue stain method (procedure)
                        • Brilliant crocein stain method (procedure)
                        • Brilliant orange stain method (procedure)
                        • Brilliant yellow stain method (procedure)
                        • Calcofluor white stain (procedure)
                        • Carminic acid stain method (procedure)
                        • Carmoisine A stain method (procedure)
                        • Celestine blue B stain method (procedure)
                        • Chloroacetate esterase stain method (procedure)
                        • Chromotrope 2R stain method (procedure)
                        • Chrysoidine R stain method (procedure)
                        • Chrysoidine Y stain method (procedure)
                        • Cochineal stain method (procedure)
                        • Congo red stain method (procedure)
                        • Bismark brown R stain method (procedure)
                        • Biebrich scarlet stain method (procedure)
                        • Beta-glucuronidase stain method (procedure)
                        • Albert's stain method (procedure)
                        • Alcian blue stain method (procedure)
                        • Alcohol soluble nigrosine stain method (procedure)
                        • Alizarin blue S stain method (procedure)
                        • Alizarin cyanine green stain method (procedure)
                        • Alizarin red S stain method (procedure)
                        • Alizarin yellow GG stain method (procedure)
                        • Alizarin yellow R stain method (procedure)
                        • Auramine stain method (procedure)
                        • Azo black stain method (procedure)
                        • Azocarmine G (GX) stain method (procedure)
                        • Azophloxin stain method (procedure)
                        • Azorubin S stain method (procedure)
                        • Azure A stain method (procedure)
                        • Azure B stain method (procedure)
                        • Azure C stain method (procedure)
                        • Benzo fast scarlet stain method (procedure)
                        • Crystal ponceau stain method (procedure)
                        • Curcumin stain method (procedure)
                        • Cytopathology staining method (procedure)
                        • Flagellar stain method (procedure)
                        • Fluorescent stain method (procedure)
                        • Fuchsin acid stain method (procedure)
                        • Fuchsin basic stain method (procedure)
                        • Fungus stain method (procedure)
                        • Gallocyanine stain method (procedure)
                        • Hall's bilirubin stain (procedure)
                        • Hematein stain method (procedure)
                        • Hematology staining procedure (procedure)
                        • Immunofluorescent stain method (procedure)
                        • Indigo carmine stain method (procedure)
                        • Indophenol from naphthol stain method (procedure)
                        • Insoluble berlin blue stain method (procedure)
                        • Janus green B stain method (procedure)
                        • Jenner-Giemsa stain method (procedure)
                        • Field's stain method (procedure)
                        • Feulgen reaction stain method (procedure)
                        • Fat red 7B stain method (procedure)
                        • Diamond black stain method (procedure)
                        • Durazol red stain method (procedure)
                        • Erie garnet stain method (procedure)
                        • Eriochrome blue black SE stain method (procedure)
                        • Erythrosin B stain method (procedure)
                        • Erythrosin Y stain method (procedure)
                        • Evans blue stain method (procedure)
                        • Fast blue B salt stain method (procedure)
                        • Fast blue BB salt stain method (procedure)
                        • Fast blue RR salt stain method (procedure)
                        • Fast garnet GBC salt stain method (procedure)
                        • Fast green FCF stain method (procedure)
                        • Fast red B salt stain method (procedure)
                        • Fast red ITR stain method (procedure)
                        • Fast red TR salt stain method (procedure)
                        • Fast sulfon black F stain method (procedure)
                        • Fast violet B salt stain method (procedure)
                        • Ziehl-Neelsen stain method (procedure)
                        • Hematoxylin and eosin stain method (procedure)
                        • Harris regressive hematoxylin and eosin stain method (procedure)
                        • Mayers progressive hematoxylin and eosin stain method (procedure)
                        • Special stain, blood or bone marrow, explain by report (procedure)
                        • Immunohistochemistry procedure (procedure)
                        • Nucleic acid hybridization procedure (procedure)
                        		 Procedure performed as to process a specimen in the lab.
                        • The product of this procedure is/are (child) specimen(s). This type of procedure starts with trimming of tissue parts sent in by the clinics, resulting in paraffin blocks, and  is repeated with cutting and staining, resulting in stained tissue slides.
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                        Laboratory procedure (procedure) (SNOMED Clinical Terms: 108252007)
                          Specimen Collection and Processing 2016-05-31T15:09:59 (dynamic / Extensible/CWE)
                          		 Item Procedure