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Template Laboratory Isolate Organizer 2017‑06‑21

Id2.16.756.5.30.1.1.10.4.17
ref
ch-palm-
Effective Date2017‑06‑21
Statusrejected RejectedVersion Label2017
Namechpalm_entry_LaboratoryIsolateOrganizerDisplay NameLaboratory Isolate Organizer
DescriptionThe Laboratory Isolate Organizer MUST ONLY be used if it is a microbiological specimen with which isolates/germs were examined.
ContextParent nodes of template element with id 2.16.756.5.30.1.1.10.4.17
LabelIHE PalM TF3 Rev.8, 6.3.4.11
ClassificationCDA Entry Level Template
Open/ClosedOpen (other than defined elements are allowed)
RelationshipSpecialization: template 2.16.840.1.113883.10.12.303 CDA Observation (2005‑09‑07)
ref
ad1bbr-

Specialization: template 1.3.6.1.4.1.19376.1.3.1.5 Laboratory Isolate Organizer (2008‑08‑08)
ref
XDLAB-
Example
XD-LAB Example
<organizer classCode="CLUSTER" moodCode="EVN">
  <templateId root="2.16.756.5.30.1.1.10.4.17"/>  <templateId root="1.3.6.1.4.1.19376.1.3.1.5"/>  <statusCode code="completed"/>  <effectiveTime value="20071108000000.0000-0500"/>  <specimen typeCode="SPC">
    <specimenRole classCode="ISLT">
      <id root="1.3.6.1.4.1.19376.1.3.4" extension="55584739"/>      <specimenPlayingEntity classCode="MIC">
        <code code="79153007" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED CT" displayName="Salmonella tennessee 6,7,14;z29;1,2,7"/>      </specimenPlayingEntity>    </specimenRole>  </specimen>  <performer typeCode="PRF">
    <templateId root="1.3.6.1.4.1.19376.1.3.3.1.7"/>    <!-- .. -->
  </performer>  <author typeCode="AUT"> ... </author>  <participant typeCode="AUTHEN">
    <templateId root="1.3.6.1.4.1.19376.1.3.3.1.5"/>    <!-- .. -->
  </participant>  <participant typeCode="RESP">
    <!-- .. -->
  </participant>  <participant typeCode="DEV">
    <!-- .. -->
  </participant>  <component>
    <observation classCode="OBS" moodCode="EVN">
      <templateId root="1.3.6.1.4.1.19376.1.3.1.6"/>      <code code="89029-0" codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC" displayName="Microbiology Culture"/>      <!-- .. -->
    </observation>  </component></organizer>
ItemDTCardConfDescriptionLabel
hl7:organizer
IHE PalM TF3 Rev.8, 6.3.4.11
@classCode
cs1 … 1FCLUSTER
@moodCode
cs1 … 1FEVN
hl7:templateId
II1 … 1MIHE PalM TF3 Rev.8, 6.3.4.11
@root
uid1 … 1F2.16.756.5.30.1.1.10.4.17
hl7:templateId
II1 … 1MIHE PalM TF3 Rev.8, 6.3.4.11
@root
uid1 … 1F1.3.6.1.4.1.19376.1.3.1.5
hl7:id
II0 … 1RAn ID for this item MAY be filled for traceability.IHE PalM TF3 Rev.8, 6.3.4.11
@root
uid1 … 1RMUST contain the OID of the system that issued the ID. OIDs of code systems, which are published in the public OID registry for the Swiss health care system (oid.refdata.ch) are REQUIRED. Others are NOT ALLOWED.
@extension
st0 … 1 Contains the ID itself. The ID MUST be unique within the system that issued the ID.
hl7:code
CE0 … 1

If the results in this isolate group are associated to a codable group, then the code SHOULD be specified. The code system is not further specified. LOINC (2.16.840.1.113883.6.1) or SNOMED CT (2.16.840.1.113883.6.96) codes or values from the HL7 vocabulary ObservationType (2.16.840.1.113883.1.11.16226) SHOULD be used.

IF this isolate group contains any other results, then the code SHOULD be omitted.

IHE PalM TF3 Rev.8, 6.3.4.11
@code
cs1 … 1RThe code MUST be specified.
@codeSystem
oid1 … 1RThe OID of the code system MUST be specified.
@codeSystemName
st1 … 1RThe name of the code system MUST be specified for tracking purposes. However, processing is NOT ALLOWED.
@displayName
st1 … 1RThe displayName of the code MUST be specified for tracking purposes. However, processing is NOT ALLOWED. Instead, a processing system is to display a user readable language translation of the code from the value set.
Included1 … 1 from 2.16.756.5.30.1.1.10.9.14 Narrative Text Reference (DYNAMIC)
The human-readable text MUST be generated automatically from the structured information of this element. The text element MUST contain the reference to the corresponding text in the human readable part, ONLY.
hl7:text
ED1 … 1MCDA‑CH V2
hl7:reference
TEL1 … 1MThe reference to the corresponding text in the human readable part must be specified by reference to content[@ID]: reference[@value='#xxx']CDA‑CH V2
@value
1 … 1RReference to the narrative part of the section in the format '#xxx', where xxx is the ID of the corresponding element.
 Schematron assertrolered error 
 teststarts-with(@value,'#') 
 MessageThe @value attribute content MUST conform to the format '#xxx', where xxx is the ID of the corresponding 'content' element. 
 Variable letNameidvalue 
 Valuesubstring-after(@value,'#') 
 Schematron assertrolered error 
 testancestor::hl7:structuredBody//*[@ID=$idvalue] 
 MessageNo narrative text found for this reference (no content element within this document has an ID that corresponds to '<value-of select="$idvalue"/>'). 
hl7:statusCode
CS1 … 1M

The status 'completed' means that all expected results for this isolate are present and in a final state.

The status 'active' means that the examinations are still running. Some results are still pending.

The status 'aborted' means that the examinations had to be aborted. Some results MAY be available.

IHE PalM TF3 Rev.8, 6.3.4.11
 CONF
The value of @code shall be drawn from value set 2.16.840.1.113883.1.11.20309 ActStatusAbortedCancelledCompleted (DYNAMIC)
hl7:effectiveTime
IVL_TS.CH.TZ1 … 1RTimestamp or period of findings (physiologically relevant period) for all results in this result group.IHE PalM TF3 Rev.8, 6.3.4.11
@value
TS.CH.TZ0 … 1 Timestamp. Accuracy of the value: Date and time with hour and minute. If it is not known, nullFavor='UNK' must be used.
hl7:low
TS.CH.TZ0 … 1Start of the period. Accuracy of the value: Date and time with hour and minute. If it is not known, nullFavor='UNK' must be used.IHE PalM TF3 Rev.8, 6.3.4.11
 Schematron assertrolered error 
 teststring-length(@value)>11 
 MessageA precision of date and time of day with at least hour and minute is required. 
hl7:high
TS.CH.TZ0 … 1End of the period. Accuracy of the value: Date and time with hour and minute. If it is not known, nullFavor='UNK' must be used.IHE PalM TF3 Rev.8, 6.3.4.11
 Schematron assertrolered error 
 teststring-length(@value)>11 
 MessageA precision of date and time of day with at least hour and minute is required. 
 Schematron assertrolered error 
 test@nullFlavor='UNK' or @value or (hl7:low and hl7:high) 
 MessageEither the imestamp or the period of the findings MUST be declared. If it is not known, nullFavor='UNK' must be used. 
Choice0 … 1
IF this isolate group is based on a specimen of a non-human material, the subject element MUST be declared.
Elements to choose from:
hl7:subject
0 … 1Contains 2.16.756.5.30.1.1.10.4.5 Non-Human Subject - subject Containment (DYNAMIC)IHE PalM TF3 Rev.8, 6.3.4.11
hl7:subject
0 … 1Contains 2.16.756.5.30.1.1.10.4.6 Human Patient with Non-Human Subject - subject Containment (DYNAMIC)IHE PalM TF3 Rev.8, 6.3.4.11
hl7:specimen
1 … 1RThe specific sub-specimen on which a microorganism was isolated and cultivated.IHE PalM TF3 Rev.8, 6.3.4.11
@typeCode
cs1 … 1FSPC
hl7:specimenRole
1 … 1RIHE PalM TF3 Rev.8, 6.3.4.11
@classCode
cs1 … 1FSPEC
hl7:id
II0 … 1Unique identifier for this isolate, known to the laboratory.IHE PalM TF3 Rev.8, 6.3.4.11
@root
uid1 … 1RMUST contain the OID of the system that issued the ID. OIDs of code systems, which are published in the public OID registry for the Swiss health care system (oid.refdata.ch) are REQUIRED. Others are NOT ALLOWED.
@extension
st0 … 1 Contains the ID itself. The ID MUST be unique within the system that issued the ID.
hl7:specimenPlayingEntity
1 … 1RIHE PalM TF3 Rev.8, 6.3.4.11
@classCode
cs1 … 1FMIC
hl7:code
CE1 … 1RIdentification of the microorganism, in a standard vocabulary.IHE PalM TF3 Rev.8, 6.3.4.11
@code
cs1 … 1RThe code MUST be specified.
@codeSystem
oid1 … 1RThe OID of the code system MUST be specified.
@codeSystemName
st1 … 1RThe name of the code system MUST be specified for tracking purposes. However, processing is NOT ALLOWED.
@displayName
st1 … 1RThe displayName of the code MUST be specified for tracking purposes. However, processing is NOT ALLOWED. Instead, a processing system is to display a user readable language translation of the code from the value set.
hl7:performer
0 … *This CAN be used to indicate who has performed the test. This information supersedes any information recorded at higher level.
Contains 2.16.756.5.30.1.1.10.4.7 Laboratory Performer - performer Containment (DYNAMIC)		IHE PalM TF3 Rev.8, 6.3.4.11
hl7:author
0 … *This CAN be used to indicate who has documented the result. This information supersedes any information recorded at higher level.
Contains 2.16.756.5.30.1.1.10.9.16 Author Compilation with name, addr and telecom (DYNAMIC)		IHE PalM TF3 Rev.8, 6.3.4.11
Choice0 … *
This CAN be used to identify other parties:
  • Who has verified the result (AUTHEN).
  • Which external laboratory has delivered the result (RESP).
  • Which device (analyzer) was used to determine the result (DEV).
Elements to choose from:
hl7:participant
0 … *Who has verified the result (AUTHEN). This information supersedes any information recorded at higher level.
Contains 2.16.756.5.30.1.1.10.4.8 Laboratory Results Validator - participant Containment (DYNAMIC)		IHE PalM TF3 Rev.8, 6.3.4.11
hl7:participant
0 … *Which external laboratory has delivered the result (RESP). This information supersedes any information recorded at higher level.
Contains 2.16.756.5.30.1.1.10.4.9 Responsible Party - participant Containment (DYNAMIC)		IHE PalM TF3 Rev.8, 6.3.4.11
hl7:participant
0 … *Which device (analyzer) was used to determine the result (DEV). This information supersedes any information recorded at higher level.
Contains 2.16.756.5.30.1.1.10.4.10 Device - participant Containment (DYNAMIC)		IHE PalM TF3 Rev.8, 6.3.4.11
Choice1 … *Elements to choose from:
hl7:component
0 … *Contains 2.16.756.5.30.1.1.10.4.11 Specimen Collection (DYNAMIC)IHE PalM TF3 Rev.8, 6.3.4.11
@typeCode
cs1 … 1FCOMP
hl7:component
0 … *Contains 2.16.756.5.30.1.1.10.4.3 Laboratory Observation (DYNAMIC)IHE PalM TF3 Rev.8, 6.3.4.11
@typeCode
cs1 … 1FCOMP
hl7:component
0 … *Contains 2.16.756.5.30.1.1.10.4.18 Multimedia Embedded Content (DYNAMIC)IHE PalM TF3 Rev.8, 6.3.4.11
@typeCode
cs1 … 1FCOMP
hl7:component
0 … *Contains 2.16.756.5.30.1.1.10.4.2 Annotation Comments (DYNAMIC)IHE PalM TF3 Rev.8, 6.3.4.11
@typeCode
cs1 … 1FCOMP
hl7:reference
0 … *This CAN be used to make reference to an external document.
Contains 2.16.756.5.30.1.1.10.4.29 External document (DYNAMIC)		IHE PalM TF3 Rev.8, 6.3.4.11
@typeCode
cs1 … 1FREFR