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Template Laboratory Isolate Organizer - Pathogen Detection 2020‑06‑26

Id2.16.756.5.30.1.1.10.4.85Effective Date2020‑06‑26
Statusactive ActiveVersion Label2020
Namecdachlrep_entry_LaboratoryIsolateOrganizerPathogenDetectionDisplay NameLaboratory Isolate Organizer - Pathogen Detection
DescriptionCoding of a pathogen detection.
ContextParent nodes of template element with id 2.16.756.5.30.1.1.10.4.85
LabelCDA‑CH‑LREP
ClassificationCDA Entry Level Template
Open/ClosedOpen (other than defined elements are allowed)
Used by / Uses
Used by 1 transaction and 4 templates, Uses 14 templates
Used by as NameVersion
2.16.756.5.30.1.1.1.1.3.9.77.1.4.2Transactionpending CDA-CH-LREP - General Laboratory Report (2018)2018‑03‑06 18:38:46
2.16.756.5.30.1.1.10.1.10linkactive General Laboratory Report (2020)2020‑06‑26
2.16.756.5.30.1.1.10.3.76linkactive Laboratory Report Item Section - coded (2020)2020‑06‑26
2.16.756.5.30.1.1.10.3.77linkactive Laboratory Speciality Section - coded (2020)2020‑06‑26
2.16.756.5.30.1.1.10.4.118Containmentactive Laboratory Report Data Processing Entry (2020)2020‑06‑26
Uses as NameVersion
2.16.756.5.30.1.1.10.4.2Containmentactive Annotation Comments (2016)DYNAMIC
2.16.756.5.30.1.1.10.4.3Containmentactive Laboratory Observation (2020)DYNAMIC
2.16.756.5.30.1.1.10.4.5Containmentactive Non-Human Subject - subject Containment (2019)DYNAMIC
2.16.756.5.30.1.1.10.4.6Containmentactive Human Patient with Non-Human Subject - subject Containment (2019)DYNAMIC
2.16.756.5.30.1.1.10.4.7Containmentactive Laboratory Performer - performer Containment (2019)DYNAMIC
2.16.756.5.30.1.1.10.4.8Containmentactive Laboratory Results Validator - participant Containment (2019)DYNAMIC
2.16.756.5.30.1.1.10.4.9Containmentactive Responsible Party - participant Containment (2019)DYNAMIC
2.16.756.5.30.1.1.10.4.10Containmentactive Device - participant Containment (2020)DYNAMIC
2.16.756.5.30.1.1.10.4.11Containmentactive Specimen Collection (2019)DYNAMIC
2.16.756.5.30.1.1.10.4.18Containmentactive Multimedia Embedded Content (2020)DYNAMIC
2.16.756.5.30.1.1.10.4.29Containmentactive External document (2017)DYNAMIC
2.16.756.5.30.1.1.10.4.87Containmentactive Laboratory Battery Organizer - Antibiogram (2020)DYNAMIC
2.16.756.5.30.1.1.10.9.16Containmentactive Author Compilation with name, addr and telecom (2020)DYNAMIC
2.16.756.5.30.1.1.10.9.49Includedraft Original Text Reference (2021)DYNAMIC
RelationshipSpecialization: template 2.16.840.1.113883.10.12.303 CDA Observation (2005‑09‑07)
ref
ad1bbr-

Specialization: template 1.3.6.1.4.1.19376.1.3.1.5 Laboratory Isolate Organizer (DYNAMIC)
ref
XDLAB-
Example
Example
<organizer classCode="CLUSTER" moodCode="EVN">
  <templateId root="2.16.756.5.30.1.1.10.4.85"/>  <templateId root="2.16.756.5.30.1.1.10.4.17"/>  <templateId root="1.3.6.1.4.1.19376.1.3.1.5"/>  <text>
    <reference value="#nartext1"/>  </text>  <statusCode code="completed"/>  <effectiveTime value="20180311200054+01:00"/>  <specimen typeCode="SPC">
    <specimenRole classCode="SPEC">
      <id root="2.999" extension="65432132"/>      <specimenPlayingEntity classCode="MIC">
        <code nullFlavor="UNK">
          <originalText>vergrünende Streptokokken</originalText>        </code>      </specimenPlayingEntity>    </specimenRole>  </specimen>  <component typeCode="COMP">
    <observation classCode="OBS" moodCode="EVN">
      <templateId root="1.3.6.1.4.1.19376.1.3.1.6"/>      <code code="6463-4" codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC" displayName="Bacteria identified in Unspecified specimen by Culture"/>      <text>
        <reference value="#nartext2"/>      </text>      <statusCode code="completed"/>      <effectiveTime value="20180311200054+01:00"/>      <value xsi:type="ST">
        vereinzelt        <reference value="#nartext1"/>      </value>    </observation>  </component></organizer>
ItemDTCardConfDescriptionLabel
hl7:organizer
1 … 1RCoding of a pathogen detection.CDA‑dotsLREP
@classCode
cs1 … 1FCLUSTER
@moodCode
cs1 … 1FEVN
hl7:templateId
II1 … 1MCDA‑dotsLREP
@root
uid1 … 1F2.16.756.5.30.1.1.10.4.85
hl7:templateId
II1 … 1MCDA‑dotsLREP
@root
uid1 … 1F2.16.756.5.30.1.1.10.4.17
hl7:templateId
II1 … 1MCDA‑dotsLREP
@root
uid1 … 1F1.3.6.1.4.1.19376.1.3.1.5
hl7:id
II0 … 1RAn ID for this item MAY be filled for traceability.CDA‑dotsLREP
@root
uid1 … 1RMUST contain the OID of the system that issued the ID. OIDs of code systems, which are published in the public OID registry for the Swiss health care system (oid.refdata.ch) are REQUIRED. Others are NOT ALLOWED.
@extension
st0 … 1 Contains the ID itself. The ID MUST be unique within the system that issued the ID.
hl7:code
CE0 … 1

If the results in this isolate group are associated to a codable group, then the code SHOULD be specified. The code system is not further specified. LOINC (2.16.840.1.113883.6.1) or SNOMED CT (2.16.840.1.113883.6.96) codes or values from the HL7 vocabulary ObservationType (2.16.840.1.113883.1.11.16226) SHOULD be used.

IF this isolate group contains any other results, then the code SHOULD be omitted.

CDA‑dotsLREP
@code
cs1 … 1RThe code MUST be specified.
@codeSystem
oid1 … 1RThe OID of the code system MUST be specified.
@codeSystemName
st1 … 1RThe name of the code system MUST be specified for tracking purposes. However, processing is NOT ALLOWED.
@displayName
st1 … 1RThe displayName of the code MUST be specified for tracking purposes. However, processing is NOT ALLOWED. Instead, a processing system is to display a user readable language translation of the code from the value set.
hl7:statusCode
CS1 … 1M

The status 'completed' means that all expected results for this isolate are present and in a final state.

CDA‑dotsLREP
@code
cs1 … 1Fcompleted
 CONF
The value of @code shall be drawn from value set 2.16.840.1.113883.1.11.20309 ActStatusAbortedCancelledCompleted (DYNAMIC)
hl7:effectiveTime
IVL_TS.CH.TZ1 … 1RTimestamp or period of findings (physiologically relevant period) for all results in this result group.CDA‑dotsLREP
@value
TS.CH.TZ0 … 1 Timestamp. Accuracy of the value: Date and time with hour and minute. If it is not known, nullFavor='UNK' must be used.
hl7:low
TS.CH.TZ0 … 1Start of the period. Accuracy of the value: Date and time with hour and minute. If it is not known, nullFavor='UNK' must be used.CDA‑dotsLREP
 Schematron assertrolered error 
 teststring-length(@value)>11 
 MessageA precision of date and time of day with at least hour and minute is required. 
hl7:high
TS.CH.TZ0 … 1End of the period. Accuracy of the value: Date and time with hour and minute. If it is not known, nullFavor='UNK' must be used.CDA‑dotsLREP
 Schematron assertrolered error 
 teststring-length(@value)>11 
 MessageA precision of date and time of day with at least hour and minute is required. 
 Schematron assertrolered error 
 test@nullFlavor='UNK' or @value or (hl7:low and hl7:high) 
 MessageEither the imestamp or the period of the findings MUST be declared. If it is not known, nullFavor='UNK' must be used. 
Choice0 … 1
IF this isolate group is based on a specimen of a non-human material, the subject element MUST be declared.
Elements to choose from:
hl7:subject
0 … 1Contains 2.16.756.5.30.1.1.10.4.5 Non-Human Subject - subject Containment (DYNAMIC)CDA‑dotsLREP
hl7:subject
0 … 1Contains 2.16.756.5.30.1.1.10.4.6 Human Patient with Non-Human Subject - subject Containment (DYNAMIC)CDA‑dotsLREP
hl7:specimen
1 … 1RThe specific sub-specimen on which a microorganism was isolated and cultivated.CDA‑dotsLREP
@typeCode
cs1 … 1FSPC
hl7:specimenRole
1 … 1RCDA‑dotsLREP
@classCode
cs1 … 1FSPEC
hl7:id
II1 … 1RUnique identifier for this isolate, known to the laboratory.CDA‑dotsLREP
@extension
st1 … 1RMUST contain the ID itself. The ID MUST be unique within the system that issued the ID.
@root
uid1 … 1RMUST contain the OID of the system that issued the ID. OIDs of code systems, which are published in the public OID registry for the Swiss health care system (oid.refdata.ch) are REQUIRED. Others are NOT ALLOWED.
hl7:specimenPlayingEntity
1 … 1RCDA‑dotsLREP
@classCode
cs1 … 1FMIC
hl7:code
CE1 … 1RIdentification of the microorganism, in a standard vocabulary.CDA‑dotsLREP
@nullFlavor
cs0 … 1FUNK
 If no code is known, nullFlavor='UNK' MUST be used.
@code
cs0 … 1 The code MUST be specified.
@codeSystem
oid0 … 1 The OID of the code system MUST be specified.
@codeSystemName
st0 … 1 The name of the code system MUST be specified for tracking purposes. However, processing is NOT ALLOWED.
@displayName
st0 … 1 The displayName of the code MUST be specified for tracking purposes. However, processing is NOT ALLOWED. Instead, a processing system is to display a user readable language translation of the code from the value set.
Included0 … 1C from 2.16.756.5.30.1.1.10.9.49 Original Text Reference (DYNAMIC)
The human-readable text MUST be generated automatically from the structured information of this element. The text element MUST contain the reference to the corresponding text in the human readable part, ONLY.
hl7:originalText
ED0 … 1CCDA‑CH V2
hl7:reference
TEL1 … 1MThe reference to the corresponding text in the human readable part must be specified by reference to content[@ID]: reference[@value='#xxx']CDA‑CH V2
@value
1 … 1RReference to the narrative part of the section in the format '#xxx', where xxx is the ID of the corresponding element.
 Schematron assertrolered error 
 teststarts-with(@value,'#') 
 MessageThe @value attribute content MUST conform to the format '#xxx', where xxx is the ID of the corresponding 'content' element. 
 Variable letNameidvalue 
 Valuesubstring-after(@value,'#') 
 Schematron assertrolered error 
 testancestor::hl7:structuredBody//*[@ID=$idvalue] 
 MessageNo narrative text found for this reference (no content element within this document has an ID that corresponds to '<value-of select="$idvalue"/>'). 
 Schematron assertrolered error 
 testparent::*/text()=ancestor::hl7:structuredBody//*[@ID=$idvalue]/text() 
 MessageThe originalText content MUST be identical to the narrative text for this reference. 
 Schematron assertrolered error 
 test(@code and @codeSystem) or (@nullFlavor='UNK') 
 MessageEither a code with its code system or nullFlavor='UNK' is required. 
 Schematron assertrolered error 
 testnot(@nullFlavor='UNK') or (hl7:originalText/text()) 
 MessageIf no code is known, the name of the microorganism MUST be declared in the originalText element. 
hl7:performer
0 … *This CAN be used to indicate who has performed the test. This information supersedes any information recorded at higher level.
Contains 2.16.756.5.30.1.1.10.4.7 Laboratory Performer - performer Containment (DYNAMIC)		CDA‑dotsLREP
hl7:author
0 … *This CAN be used to indicate who has documented the result. This information supersedes any information recorded at higher level.
Contains 2.16.756.5.30.1.1.10.9.16 Author Compilation with name, addr and telecom (DYNAMIC)		CDA‑dotsLREP
Choice0 … *
This CAN be used to identify other parties:
  • Who has verified the result (AUTHEN).
  • Which external laboratory has delivered the result (RESP).
  • Which device (analyzer) was used to determine the result (DEV).
Elements to choose from:
hl7:participant
0 … *Who has verified the result (AUTHEN). This information supersedes any information recorded at higher level.
Contains 2.16.756.5.30.1.1.10.4.8 Laboratory Results Validator - participant Containment (DYNAMIC)		CDA‑dotsLREP
hl7:participant
0 … *Which external laboratory has delivered the result (RESP). This information supersedes any information recorded at higher level.
Contains 2.16.756.5.30.1.1.10.4.9 Responsible Party - participant Containment (DYNAMIC)		CDA‑dotsLREP
hl7:participant
0 … *Which device (analyzer) was used to determine the result (DEV). This information supersedes any information recorded at higher level.
Contains 2.16.756.5.30.1.1.10.4.10 Device - participant Containment (DYNAMIC)		CDA‑dotsLREP
Choice1 … *
Possible contents:
  • Coding of the method by means of "Laboratory Observation". The observation MUST be coded by a LOINC code having culture as method. Use the filter 'method:culture' on search.loinc.org (see https://search.loinc.org/searchLOINC/search.zul?query=method%3Aculture).
  • Coding of an antibiogram or by means of "Laboratory Battery Organizer - Antibiogram".
Elements to choose from:
hl7:component
0 … *Coding of the method. The observation MUST be coded by a LOINC code having culture as method. Use the filter 'method:culture' on search.loinc.org (see https://search.loinc.org/searchLOINC/search.zul?query=method%3Aculture)
Contains 2.16.756.5.30.1.1.10.4.3 Laboratory Observation (DYNAMIC)		CDA‑dotsLREP
@typeCode
cs1 … 1FCOMP
hl7:component
0 … *Coding of an antibiogram.
Contains 2.16.756.5.30.1.1.10.4.87 Laboratory Battery Organizer - Antibiogram (DYNAMIC)		CDA‑dotsLREP
@typeCode
cs1 … 1FCOMP
hl7:component
0 … *Contains 2.16.756.5.30.1.1.10.4.11 Specimen Collection (DYNAMIC)CDA‑dotsLREP
@typeCode
cs1 … 1FCOMP
hl7:component
0 … *Contains 2.16.756.5.30.1.1.10.4.18 Multimedia Embedded Content (DYNAMIC)CDA‑dotsLREP
@typeCode
cs1 … 1FCOMP
hl7:component
0 … *Contains 2.16.756.5.30.1.1.10.4.2 Annotation Comments (DYNAMIC)CDA‑dotsLREP
@typeCode
cs1 … 1FCOMP
hl7:reference
0 … *This CAN be used to make reference to an external document.
Contains 2.16.756.5.30.1.1.10.4.29 External document (DYNAMIC)		CDA‑dotsLREP
@typeCode
cs1 … 1FREFR