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OcDeC
Id orch-dataelement-1 Version 2021-04-13 11:26:09
Status Draft Version Label
Description
OcDeC - Orchestra Core Data Elements for COVID-19 

The ORCHESTRA Core Data Set comprises of all concepts identified as having been and being collected across at least two clinical studies in the project. 
In its current form, it contains a curated version of all data elements that are used as part of the "Long Term Sequelae" (LTS) and "Fragile Population" (FP) studies (including Genomics variables defined by WP6), as well as the Healthcare worker study cohort (WP5) and the Luxembourg study (WP3). Both the LTS and FP studies are using REDCap eCRFs for data collection and data management.

Categories
Variables are grouped into categories that were defined by clinical partners of the respective studies. The categories correspond to the instruments used as part of the eCRFs.

Study-specific Data Sets
Shown as well are data that are defined and used only within one clinical study in ORCHESTRA, including:
  • Long-Term Sequeale study (WP2) data variables
  • Fragile Population (WP4) study data variables
  • Healthcare Workers (WP5) studies' data variables
  • General Population (WP3), specifically the Luxembourg study data variables
Terminologies
International standard terminologies and classifications were used to semantically represent variables and value sets. 
These include codes from:
  • SNOMED CT    (for clinical concepts; symptoms, diseases, etc.)
  • LOINC          (for laboratory values, documents, dates,...)
  • ATC                  (for medications)
  • ICD-10              (for diseases and disorders)
  • NCI Thesaurus (for genomics variables)
  • ISBT-128          (for plasma products)
Rationale
ORCHESTRA project
The ORCHESTRA project is funded by the European Union’s Horizon 2020 research and innovation program and unites 26 partners from 15 countries in the goal to gain valuable scientific insights to fight the SARS-CoV-2 pandemic based on the analysis of ongoing, prospective and retrospective study data.

https://orchestra-cohort.eu/ 


Contact
The Core Data Set model in Art-Decor was created by the two members of task 7.2 in the ORCHESTRA project:

  • Caroline Stellmach (Research Fellow at the Berlin Institute of Health at Charité)
  • Eugenia Rinaldi (Research Fellow at the Berlin Institute of Health at Charité)
Comment
The content presented here uses standard codes from the following terminologies and classifications: SNOMED CT®, LOINC®,  ATC, ICD-10, ISBT-128 and NCIt and were used in compliance with the applicable licensing. 
  • A research license has been granted to the ORCHESTRA project by SNOMED International*.
  • SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the SNOMED International. All rights reserved. SNOMED CT® was originally created by the College of American Pathologists. “SNOMED”, “SNOMED CT” and “SNOMED Clinical Terms” are registered trademarks of the SNOMED International (www.snomed.org). 
  • In terms of usage of LOINC codes within the data shown here, we declare:  "This material contains content from LOINC (http://loinc.org). LOINC is copyright © 1995-2022, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at  http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc."
  • The use of NCIt terms, ATC codes and ICD-10 codes is based on their release under CC BY 4.0 licenses.
  • Some of the questionnaires, scales and indexes used within the clinical studies listed here are copyrighted. For re-use of the variables, it is therefore necessary to check the licence of use for each of them before applying them to ensure compliance with the license.

 

*!! Please be aware that in order to use SNOMED CT concepts within any other non-commercial research project such as ORCHESTRA, it is imperative that you obtain a fee exemption as a 'qualifying research project', for more information, refer to this: https://www.snomed.org/fee-exemptions.  
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true50
Dataset Dataset 1 –
Id orch-dataset-1 Version 2021-04-13 11:26:09
Status Draft Version Label
false
Usage (0)