Id2.16.840.1.113883.10.20.20.2.1.1Effective Date2013‑02‑01
Statusdraft DraftVersion Label
NameGeneticVariationAssociatedObservationAminoAcidChangeDisplay NameGenetic Variation Associated Observation Amino Acid Change
DescriptionThe GeneticVariationAssociatedObservationAminoAcid template is a sub-template of GenomicAssociatedObservation and is used to carry the amino acid change of that genetic variation.
ContextParent nodes of template element with id 2.16.840.1.113883.10.20.20.2.1.1
ClassificationCDA Entry Level Template
Open/ClosedOpen (other than defined elements are allowed)
RelationshipSpecialization: template 2.16.840.1.113883.10.12.303 CDA Observation (2005‑09‑07)
ref
ad1bbr-

Specialization: template 2.16.840.1.113883.10.20.20.4 Genomic Associated Observation (DYNAMIC)
Example
Example
<observation classCode="OBS" moodCode="EVN">
  <templateId root="2.16.840.1.113883.10.20.20.2.1.1"/>  <code code="48005-3" codeSystemName="LOINC" displayName="Amino Acid Change"/>  <value xsi:type="CD" code="Val37Ile"/></observation>
ItemDTCardConfDescriptionLabel
hl7:observation
Genedotsange
@classCode
cs0 … 1FOBS
@moodCode
cs0 … 1FEVN
 Constraint
SHALL satisfy: Either "DNA Change" observation or "Amino Acid Change" observation is required but both
may be specified.
hl7:templateId
II1 … 1MGenedotsange
@root
uid1 … 1F2.16.840.1.113883.10.20.20.2.1.1
hl7:code
1 … 1RGenedotsange
hl7:code
CD1 … 1RCONFdotsR‑60
@code
CONF0 … 1F48005-3
@codeSystem
0 … 1F2.16.840.1.113883.6.1
@codeSystemName
0 … 1FLOINC
@displayName
0 … 1FAmino acid change
hl7:value
CD0 … 1RCONFdotsR‑61
 Constraint@code MAY be selected from (CodeSystem: Human Genome Variation Society (HGVS) Nomenclature)

  • Human Genome Variation Society (HGVS) Nomenclature standards for the description of sequence variations are maintained at: http://www.hgvs.org/mutnomen/recs.html#general.