Id2.16.840.1.113883.10.20.20.3.2Effective Date2013‑02‑01
Statusdraft DraftVersion Label
NameGenomicSourceClassDisplay NameGenomic Source Class
Description
The GenomicSourceClass template represents the genomic class of the specimen being analyzed: germline for inherited genome, somatic for cancer genome (e.g. DNA from tumor cells), and prenatal for fetal genome. These options are coded in LOINC and may be bound to the value attribute of this template.
ContextParent nodes of template element with id 2.16.840.1.113883.10.20.20.3.2
ClassificationCDA Entry Level Template
Open/ClosedOpen (other than defined elements are allowed)
Used by / Uses
Used by 1 transaction and 6 templates, Uses 0 templates
Used by as NameVersion
2.16.840.1.113883.3.1937.777.20.4.2Transactiondraft Genetic Testing Report (GTR) (DSTU Release 1)2018‑03‑22 11:37:04
2.16.840.1.113883.2.6.60.13.10.17Containmentdraft Untersuchungsmaterial Section2018‑10‑25 13:12:54
2.16.840.1.113883.10.20.20linkdraft Genetic Testing Report2013‑02‑01
2.16.840.1.113883.10.20.20.1.1linkdraft Summary Section2013‑02‑01
2.16.840.1.113883.10.20.20.1.7Containmentdraft Specimen Section2013‑02‑01
2.16.840.1.113883.10.20.20.1.8linkdraft Test Details Section2013‑02‑01
2.16.840.1.113883.10.20.20.2Containmentdraft Clinical Genomic Statement2013‑02‑01
RelationshipSpecialization: template 2.16.840.1.113883.10.20.20.4 Genomic Associated Observation (DYNAMIC)
Example
Example
<observation classCode="OBS" moodCode="EVN">
  <templateId root="2.16.840.1.113883.10.20.20.3.2"/>  <id root="2.16.840.1.113883.18.12.7.30.9.3.7"/>  <code code="48002-0" codeSystemName="LOINC" displayName="Genomic source class"/>  <value xsi:type="CD" code="LA6683-2" codeSystemName="LOINC" displayName="Germline"/>  <specimen>
    <templateId root="2.16.840.1.113883.10.20.20.3.1"/>    <specimenRole>
      <specimenPlayingEntity>
        <code code="180796014" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED-CT" displayName="Peripheral blood specimen"/>      </specimenPlayingEntity>    </specimenRole>  </specimen></observation>
ItemDTCardConfDescriptionLabel
hl7:observation
GTR GenomicSourceClass (self) SHALL satisfy: If self.code.code=48002-0 (LOINC code for Genomic source class), then self.value.code SHALL be drawn from the LOINC answer list 48002-0.
CONFdotsR‑80
@classCode
cs0 … 1FOBS
@moodCode
cs0 … 1FEVN
hl7:templateId
II1 … 1MCONFdotsR‑80
@root
uid1 … 1F2.16.840.1.113883.10.20.20.3.2
hl7:code
CD1 … 1RCONFdotsR‑81
@code
CONF0 … 1F48002-0
@codeSystem
0 … 1F2.16.840.1.113883.6.1
@codeSystemName
0 … 1FLOINC
@displayName
0 … 1FGenomic source class
hl7:value
CD0 … 1RCONFdotsR‑82
 CONF
The value of @code shall be drawn from value set 2.16.840.1.113883.10.20.20.9.12 Genomic source class (2013‑02‑01)
hl7:specimen
0 … 1R
It is important to explicitly associate the specimen information to the clinical genomic statement (or a reference the specimen structured data in a Specimen section if specified), because the specimen is not part of the header and even if specified in a Specimen section, it doesn't apply necessarily to other parts of the GTR body by the CDA context conduction rules.
CONFdotsR‑80
 ConstraintContains exactly one [1..1] CDA Specimen